Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs62227166 chr21:45452528 G/A 1.37E-6 502 21.83 24.67 0.77 KM Plot
LGG rs62511362 chr8:143440170 G/A 6.46E-6 501 23.58 19.57 3.7 KM Plot
LGG rs62513775 chr8:143414559 G/A 1.21E-5 495 23.93 18.85 3.7 KM Plot
LGG rs62579976 chr9:133361191 T/A 4.0E-5 500 22.6 20.97 14.98 KM Plot
LGG rs6416649 chr16:8713325 T/G 4.56E-9 502 8.17 18.07 23.98 KM Plot
LGG rs6416650 chr16:8713376 G/A 4.56E-9 502 8.17 18.07 23.98 KM Plot
LGG rs6416651 chr16:8713522 G/A 4.56E-9 502 8.17 18.07 23.98 KM Plot
LGG rs6416652 chr16:8713821 A/G 4.56E-9 502 8.17 18.07 23.98 KM Plot
LGG rs6482598 chr10:27426375 T/C 7.67E-5 507 19.15 20.43 24.53 KM Plot
LGG rs6498149 chr16:8711175 A/G 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs6498150 chr16:8711223 T/G 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs6498151 chr16:8711258 G/A 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs6498153 chr16:8711290 T/G 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs6498156 chr16:8711668 A/C 2.26E-7 501 8.17 17.32 24.05 KM Plot
LGG rs6498157 chr16:8711726 T/G 1.6E-7 500 8.17 17.32 24.03 KM Plot